D16S539

Other Names

Chromosomal Location

GenBank Accession

D16

16q24.1

Chr 16; 84.944 Mb (May 2004, NCBI build 35)

G07925; has 11 repeats
AC024591.3; has 11 repeats

Repeat: [GATA] = GenBank top strand

Reported Primers	Ref.	PCR Primer Sequences
Set 1	Promega	PowerPlex 1.1 (FL labeled), PowerPlex 16 (JOE labeled) primer sequences 5'-GGGGGTCTAAGAGCTTGTAAAAAG-3' 5'-[JOE]-GTTTGTGTGTGCATCTGTAAGCATGTATC-3'
Set 2	CHLC Web Site	5'-GATCCCAAGCTCTTCCTCTT-3' 5'-ACGTTTGTGTGTGCATCTGT-3'
Set 3	ABI	COfiler (5-FAM labeled), SGM Plus (5-FAM labeled)
Set 4	ABI	Identifiler (VIC labeled with *mobility modifier)

PCR Product Sizes of Observed Alleles

Allele (Repeat #)	Set 1	Set 2	Set 3	Set 4*	Repeat Structure	Ref.
4	260 bp	129 bp	229 bp	248 bp		*variant allele*
5	264 bp	133 bp	233 bp	252 bp	[GATA]₅	721
6	268 bp	137 bp	237 bp	256 bp		*variant allele*
7	272 bp	141 bp	241 bp	260 bp		*variant allele*
8	276 bp	145 bp	245 bp	264 bp	[GATA]₈	721
8.3	279 bp	148 bp	248 bp	267 bp		*variant allele*
9	280 bp	149 bp	249 bp	268 bp	[GATA]₉	721
9.3	283 bp	152 bp	252 bp	271 bp		*variant allele*
10	284 bp	153 bp	253 bp	272 bp	[GATA]₁₀	721
11	288 bp	157 bp	257 bp	276 bp	[GATA]₁₁	721
11.3	291 bp	160 bp	260 bp	279 bp		*variant allele*
12	292 bp	161 bp	261 bp	280 bp	[GATA]₁₂	721
12.1	293 bp	162 bp	262 bp	281 bp		*variant allele*
12.2	294 bp	163 bp	263 bp	282 bp		*variant allele*
13	296 bp	165 bp	265 bp	284 bp	[GATA]₁₃	721
13.1	297 bp	166 bp	266 bp	285 bp		*variant allele*
13.3	299 bp	168 bp	268 bp	287 bp		*variant allele*
14	300 bp	169 bp	269 bp	288 bp	[GATA]₁₄	721
14.3	303 bp	172 bp	272 bp	291 bp		*variant allele*
15	304 bp	173 bp	273 bp	292 bp	[GATA]₁₅	721
16	308 bp	177 bp	277 bp	296 bp		*variant allele*

Allelic Ladders: Commercially available from Promega and Applied Biosystems

Common Multiplexes: PowerPlex 1.1, PowerPlex 16, COfiler, SGM Plus, Identifiler

Last Updated: 06/30/2007