D2S441
|
Other Names |
GenBank Accession |
|
|
D2S1778 |
2p14 chr 2: 68,213,613 bp (NCBI July 2003 human genome assembly) |
AC079112 has 12 repeats |
Repeat: [TCTA] = GenBank top strand
|
Reported Primers |
Ref. |
PCR Primer Sequences |
|
Set 1 |
GDB |
5'-TGCACCCAACATTCTAACAA-3' 5'-ATTGGAGCTAAGTGGCTGTG-3' |
| Set 2 | Coble and Butler (2005) |
5'-[VIC]-CTGTGGCTCATCTATGAAAACTT-3' 5'-GAAGTGGCTGTGGTGTTATGAT-3' |
PCR Product Sizes of Observed Alleles
|
Allele (Repeat #) |
Set 1 |
Set 2 miniSTR |
Repeat Structure |
Ref. |
|
8 |
|
78 bp |
[TCTA]8 |
|
|
9 |
|
82 bp |
[TCTA]9 |
|
|
10 |
|
86 bp |
[TCTA]10 |
|
|
11 |
|
90 bp |
[TCTA]11 |
|
|
11.3 |
|
93 bp |
|
|
|
12 |
|
94 bp |
[TCTA]12 |
|
|
12.3 |
|
97 bp |
|
|
| 13 | 98 bp | [TCTA]13 | ||
| 13.3 | 101 bp | |||
| 14 | 102 bp | [TCTA]14 | ||
| 14.3 | 105 bp | |||
| 15 | 106 bp | [TCTA]15 | ||
| 16 | 110 bp | [TCTA]16 | ||
| 17 | 114 bp | [TCTA]17 |
Allelic Ladders: NIST ladder alleles 9,10,11,11.3, 12, 12.3, 13, 13.3, 14, 14.3, 15, 16, 17
Assay Available: NIST NC02
Genotypes from Standard Samples: 9947A (10,14), 9948 (11,12), ABI 007 (14,15), K562 (10,14)
Population Data:
| Source | Number of Samples | Population |
| Coble and Butler (2005)/Hill et al. (2006) | 265 | U.S. Caucasians |
| Coble and Butler (2005)/Hill et al. (2006) | 257 | African Americans |
| Coble and Butler (2005)/Hill et al. (2006) | 140 | U.S. Hispanics |
| Asamura et al. (2006) IJLM | 142 | Japanese |
| Martin et al. (2006) FSI | 264 | Spanish |
| Yong et al. (2006) FSI | 185 | Singapore/Chinese |
| Yong et al. (2006) FSI | 182 | Singapore/Malay |
| Yong et al. (2006) FSI | 178 | Singapore/Indian |
| Simon Lim, in preparation | 226 | Chinese |
| Simon Lim, in preparation | 238 | Malaysian |
| Simon Lim, in preparation | 238 | East Indian |
| Prof. Ranieri Domenici, in preparation | 100 | Italian |
| total = 2,415 |
Reference Sequence: GenBank accession AC079112; positions 85,324..85,415