D22S1045

Other Names
Chromosomal Location
GenBank Accession
CHLC.ATA37D06
22q12.3

chr 22: 35,779,368 bp

(NCBI July 2003 human genome assembly)

AL022314 has 17 repeats

Repeat: [ATT]n = top GenBank strand - reported previously as TAA in Coble and Butler (2005) based on a different GenBank sequence

 

Reported Primers Ref. PCR Primer Sequences
Set 1
GDB

5'-GCTAGATTTTCCCCGATGAT-3'

5'-ATGTAAAGTGCTCTCAAGAGTGC-3'
Set 2
 Coble and Butler (2005)

5'-[NED]-ATTTTCCCCGATGATAGTAGTCT-3'

5'-GCGAATGTATGATTGGCAATATTTTT-3'

 

PCR Product Sizes of Observed Alleles
 

Allele (Repeat #)
Set 1
Set 2

miniSTR
Repeat Structure
 Ref.
8 129 bp 79 bp [ATT]5 ACT [ATT]2  
9 132 bp 82 bp [ATT]6 ACT [ATT]2  
10 135 bp 85 bp [ATT]7 ACT [ATT]2  
11 138 bp 88 bp [ATT]8 ACT [ATT]2  
12 141 bp 91 bp [ATT]9 ACT [ATT]2  
13 144 bp 94 bp [ATT]10 ACT [ATT]2  
14 147 bp 97 bp [ATT]11 ACT [ATT]2  
15 150 bp 100 bp [ATT]12 ACT [ATT]2  
16 153 bp 103 bp [ATT]13 ACT [ATT]2  
17 156 bp 106 bp [ATT]14 ACT [ATT]2  
18 159 bp 109 bp [ATT]15 ACT [ATT]2  
19 162 bp 112 bp [ATT]16 ACT [ATT]2  
20 165 bp 115 bp [ATT]17 ACT [ATT]2  

Allelic Ladders: NIST ladder allele range: 8,10-19 (note nomenclature change from Coble and Butler 2005)

Assay Available: NIST NC01

Genotypes from Standard Samples: 9947A (11,14), 9948 (16,18), ABI 007 (11,16), K562 (16,16)

Population Data:  

Source Number of Samples Population
Coble and Butler (2005)/Hill et al. (2006) 265 U.S. Caucasians
Coble and Butler (2005)/Hill et al. (2006) 257 African Americans
Coble and Butler (2005)/Hill et al. (2006) 140 U.S. Hispanics
Asamura et al. (2006) IJLM 142 Japanese
Martin et al. (2006) FSI 264 Spanish
Yong et al. (2006) FSI 185 Singapore/Chinese
Yong et al. (2006) FSI 182 Singapore/Malay
Yong et al. (2006) FSI 178 Singapore/Indian
Simon Lim, in preparation 226 Chinese
Simon Lim, in preparation 238 Malaysian
Simon Lim, in preparation 238 East Indian
Prof. Ranieri Domenici, in preparation 100 Italian
     
  total = 2,415  

Reference Sequence: GenBank accession AL022314; positions 92,943..93,047

 

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Updated: 11/11/2010