Reference Sequences for Commonly Used STR Markers

The following reference sequences have proven useful for primer design with miniSTRs.

 

>CSF1PO (GenBank X14720; 12 AGAT repeats)

CAGCTGGGATGTGGAGTGGTGTGAGGAGTGGCCACAGGGGAGCAGAGGAGGTGGCAGAAGCCGGAGGTAAAGGTGTCTTAAAGTGAGAAAGAATAACTGCATCTTAACCTATTGGGAGGTCATTGTAAAGAGGAGAGTGATGGGGTCAGATTGTACAGAGGAGGCACTTCGTGGTGGTCAGGAGCACACACTCCAGGGCAGTGTTCCAACCTGAGTCTGCCAAGGACTAGCAGGTTGCTAACCACCCTGTGTCTCAGTTTTCCTACCTGTAAAATGAAGATATTAACAGTAACTGCCTTCATAGATAGAAGATAGATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGAAGTACTTAGAACAGGGTCTGACACAGGAAATGCTGTCCAAGTGTGCACCAGGAGATAGTATCTGAGAAGGCTCAGTCTGGCACCATGTGGGTTGGGTGGGAACCTGGAGGCTGGAGAATGGGCTGAAGATGGCCAGTGGTGTGTGGAAGAGTCTGAGATGCAGGGATGAGGAAGAGAAAGGAGATAAGGATGACCTCCAGGTCTCTGGCTATGGTGATTGGGTGCA

 

>FGA (GenBank M64982; 21 repeats)

ACACCTTTAAAATTCCAAAGAAAGTTCTTCTTCTATATTTCTTTGGGATTACTAATTGCTATTAGGACATCTTAACTGGCATTCATGGAAGGCTGCAGGGCATAACATTATCCAAAAGTCAAATGCCCCATAGGTTTTGAACTCACAGATTAAACTGTAACCAAAATAAAATTAGGCATATTTACAAGCTAGTTTCTTTCTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCCTTTCTTCCTTTCTTTTTTGCTGGCAATTACAGACAAATCACTCAGCAGCTACTTCAATAACCATATTTTCGATTTCAGACCGTGATAATACCTACAACCGAGTGTCAGAGGATCTGAGAAGCAGAATTGAAGTCCTGAAGCGCAAAGTCATAGAAAAAGTACAGCATATCCAGCTTCTGCAGAAAAATGTTAGAGCTCAGTTGGTTGATATGAAACGACTGGAGGTAAGTATGTGGCTGTGGTCCCGAGTGTCCTTGTTTTTGA

 

>TH01 (GenBank D00269; 9 TCAT repeats)

CCTACTCCCACCTGCCCCTGCCTCCCTCTGCCCCAGCTGCCCTAGTCAGCACCCCAACCAGCCTGCCTGCTTGGGGAGGCAGCCCCAAGGCCCTTCCCAGGCTCTAGCAGCAGCTCATGGTGGGGGGTCCTGGGCAAATAGGGGGCAAAATTCAAAGGGTATCTGGGCTCTGGGGTGATTCCCATTGGCCTGTTCCTCCCTTATTTCCCTCATTCATTCATTCATTCATTCATTCATTCATTCATTCACCATGGAGTCTGTGTTCCCTGTGACCTGCACTCGGAAGCCCTGTGTACAGGGGACTGTGTGGGCCAGGCTGGATAATCGGGAGCTTTTCAGCCCACAGGAGGGGTCTTCGGTGCCTCCTTGGGCACTCAGAACCTTGGGCTCCCTGGCACATTTAAAATGGGTTTTTATTTA

 

>TPOX (GenBank M68651; 11 AATG repeats)

CCACTGCTGACTTCCCCAAGCTAACTGTGCCACAGAGTGGGGACCCCCTCCCAGCTCTCACAACCCCCACCTTCCTCTGCTTCACTTTTCACCAACTGAAATATGGCCAAAGGCAAAAACCCATGTTCCCACTGGCCTGTGGGTCCCCCCATAGATCGTAAGCCCAGGAGGAAGGGCTGTGTTTCAGGGCTGTGATCACTAGCACCCAGAACCGTCGACTGGCACAGAACAGGCACTTAGGGAACCCTCACTGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGTTTGGGCAAATAAACGCTGACAAGGACAGAAGGGCCTAGCGGGAAGGGAACAGGAGTAAGACCAGCGCACAGCCCGACTTGTGTTCAGAAGACCTGGGATTGGACCTGAGGAGTTCAATTTTGGATGAATCTCTTAATTAACCTGTGTGGTTCCCAGTTCCTCCCCTGAGCGCCCAGGACAGTAGAGTCAACCTCACGTTTGAGCGTTGGGGACGCAAACACGAGAGTGCTTGGTGTGAGCAC

 

>VWA (GenBank M25858; 18 repeats)

AGCAGTAGAGAGAACTAGAGGGATCATTTACTTCAAGCCCCTCATTTTATAGACATTACTAGTCTCCTACAATGTGCCGGGCACTTTGCCCTTATTATTTTGTGAACTCCTCAGACTGATCCTATAAGGTAGAGTTCCCACCTTCCAGAAGAAGAAACAGGTCTAGAGGATCCAAGTTGACTTGGCTGAGATGTGAAAGCCCTAGTGGATGATAAGAATAATCAGTATGTGACTTGGATTGATCTATCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTATCCATCCATCCTATGTATTTATCATCTGTCCTATCTCTATCTAACCTATGTATCTATTTATCATCTATCCTGTCTCTATCTATCCTTTGTATCTATCA

 

>D3S1358 (NT_005997 positions 754983-755121; 18 repeats)

CCATCTCTTAAAAAAAAAAATTAGCCGGACATGGTGGCTCATGCCTATAATCCCAGGTACTTGGGAGGCTGAGGCAGGAGGACTGCTTGAGCCCAGGAGTTTGAGGCTGTAGTGAGCTATGATTCCCCCACTGCAGTCCAATCTGGGTGACAGAGCAAGACCCTGTCTCATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGATAGATACATGCAAGCCTCTGTTGATTTCATGAGTATAAGAGATGCCCCCAAAGGCACAGGGAATACACACCACAGAAAAATAGATCCCTGGGCAGAAGTGGGCAAGTGAATATGGCCAGCATGCCCATTCTGGAGCAGTGCCCTGGCAGCTGCAGTCCTCACCTGGGAATAGCTTTTCCACT

 

>D5S818 (GenBank AC008512-reverse complement; 11 AGAT repeats)

CATTTGTAATTTTCTAATTCAAAGGAGTATATAATTATGTAATAATTTTAAAATTAAATACTGAGACATGCATATGCTTTTAAAGCTTCTAATTAAAGTGGTGTCCCAGATAATCTGTACTAATAAAAGTATATTTTAATAGCAAGTATGTGACAAGGGTGATTTTCCTCTTTGGTATCCTTATGTAATATTTTGAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGGTATAAATAAGGATACAGATAAAGATACAAATGTTGTAAACTGTGGCTATGATTGGAATCACTTGGCTAAAAAGCACTAAAGCATTCCTCTGAGAGAGACAATTACTTTTTTGCTTAGGAAACTACCTCAACAGCCTATTAGCATCTGAAATATGAGGTCCACTATCCAGATGGGAGAGGTTTAGAAAAAGAAGACTTATATTACTCTGTATAATGAAATGATGGAGTATTTGGAG

 

>D7S820 (GenBank AC004848-reverse complement; 13 GATA repeats)

ACTGCAACCTCCGCTTCTTGGGTCAAGTGGTTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCTACTGCATCCAGCTAATTTTTGTATTTTTTTTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGACTATGGAGTTATTTTAAGGTTAATATATATAAAGGGTATGATAGAACACTTGTCATAGTTTAGAACGAACTAACGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGATTGATAGTTTTTTTTAATCTCACTAAATAGTCTATAGTAAACATTTAATTACCAATATTTGGTGCAATTCTGTCAATGAGGATAAATGTGGAATCGTTATAATTCTTAAGAATATATATTCCCTCTGAGTTTTTGATACCTCAGATTTTAAGACCTCACAATTATCTCATAAGGCTTAAAATCAATCATATTTTGAGGATCAACTTATGGTATTTTTGCCTGTTTTTATTCCTTCTGGTGTGAAAACTGATGCCTTCCATCGTGTAA

 

>D8S1179 (GenBank AF216671; 13 repeats)

TCTGAAGTAAGTAAAACATTGATACAGGATCCTTGGGGTGTCGCTTTTTTGGCCAGAAACCTCTGTAGCCAGTGGCGCCTTTGCCTGAGTTTTGCTCAGGCCCACTGGGCTCTTTTTGCCCACACGGCCGGGCAACTTATATGTATTTTTGTATTTCATGTGTACATTCGTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTCCCCACAGTGAAAATAATCTACAGGATAGGTAAATAAATTAAGGCATATTCACGCAATGGGATACGATACAGTGATGAAAATGAACTAATTATAGCTACGTGAAACTATACTCATGAACACAATTTGGTAAAAGAAACTGGAAACAAGAATACATACGGTTTTTGACAGCTGTACTATTTTACATTCCCAACAA

 

>D13S317 (GenBank AL353628-reverse complement; 11 TATC repeats)

GTATTGCAAGCACTTAGTTACATTTCTAGCATATAACACATGATCAATAAATATTTTGACATGAACAAATGGTAATTCTGCCTACAGCCAATGTGAATATTGGGATGGGTTGCTGGACATGGTATCACAGAAGTCTGGGATGTGGAGGAGAGTTCATTTCTTTAGTGGGCATCCGTGACTCTCTGGACTCTGACCCATCTAACGCCTATCTGTATTTACAAATACATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATCATCTATCTATCTTTCTGTCTGTCTTTTTGGGCTGCCTATGGCTCAACCCAAGTTGAAGGAGGAGATTTGACCAACAATTCAAGCTCTCTGAATATGTTTTGAAAATAATGTATATTAATGAATGTACAAATTTCCCCACTTGTACTTTCAGACTGTTATCTGTGAGTTAAAACTCCTCCACTCTTTTTCCTACCCAAATAA

 

>D16S539 (GenBank AC024591-reverse complement; 11 GATA repeats)

GGAGGATGACTGTGTTCCCACTCTCAGTCCTGCCGAGGTGCCTGACAGCCCTGCACCCAGGAGCTGGGGGGTCTAAGAGCTTGTAAAAAGTGTACAAGTGCCAGATGCTCGTTGTGCACAAATCTAAATGCAGAAAAGCACTGAAAGAAGAATCCCGAAAACCACAGTTCCCATTTTTATATGGGAGCAAACAAAGCAGATCCCAAGCTCTTCCTCTTCCCTAGATCAATACAGACAGACAGACAGGTGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATCATTGAAAGACAAAACAGAGATGGATGATAGATACATGCTTACAGATGCACACACAAACGCTAAATGGTATAAAAATGGAATCACTCTGTAGGCTGTTTTACCACCTACTTTACTAAATTAATGAGTTATTGAGTATAATTTAATTTTATATACTAATTTGAAACTGTGTCATTAGGTTTTTAAGT

 

>D18S51 (GenBank AP001534-reverse complement; 18 AGAA repeats)

TACAAAAAAATACAAAAATTAGTTGGGCATGGTGGCACGTGCCTGTAGTCTCAGCTACTTGCAGGGCTGAGGCAGGAGGAGTTCTTGAGCCCAGAAGGTTAAGGCTGCAGTGAGCCATGTTCATGCCACTGCACTTCACTCTGAGTGACAAATTGAGACCTTGTCTCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAGGAAAGAAAGAGAAAAAGAAAAGAAATAGTAGCAACTGTTATTGTAAGACATCTCCACACACCAGAGAAGTTAATTTTAATTTTAACATGTTAAGAACAGAGAGAAGCCAACATGTCCACCTTAGGCTGACGGTTTGTTTATTTGTGTTGTTGCTGGTAGTCGGGTTTGTTATTTTTAAAGTAGCTTATCCAATACTTCATTAACAATTTCAGTAAGTTATTTCATCTTTCAACATAAATACGCACAAGGATTTCTTCTGGTCAAGACCAAACTAATATTAGTCCATAGTAG

 

>D21S11 (GenBank AP000433; 29 repeats)

AACTGAAGGTTACACTATCAGCTTCCGTTGTTCTAAGGGCTTCAGACTTGGACAGCCACACTGCCAGCTTCCCTGATTCTTCAGCTTGTAGATGGTCTGTTATGGGACTTTTCTCAGTCTCCATAAATATGTGAGTCAATTCCCCAAGTGAATTGCCTTCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGTCTATCTATCCAGTCTATCTACCTCCTATTAGTCTGTCTCTGGAGAACATTGACTAATACAACATCTTTAATATATCACAGTTTAATTTCAAGTTATATCATACCACTTCATACATTATATAAAACCTTACAGTGTTTCTCCCTTCTCAGTGTTTATGGCTAGTAATTTTTTACTGGGTGCCAGACACTAAT

 

>Penta D (GenBank AP001752; 13 AAAGA repeats)

ATGGTGAGGCTGAAGTAGGATCACTTGAGCCTGGAAGGTCGAAGCTGAAGTGAGCCATGATCACACCACTACACTCCAGCCTAGGTGACAGAGCAAGACACCATCTCAAGAAAGAAAAAAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAACGAAGGGGAAAAAAAGAGAATCATAAACATAAATGTAAAATTTCTCAAAAAAATCGTTATGACCATAGGTTAGGCAAATATTTCTTAGATATCACAAAATCATGACCTATTAAAAAATAATAATAAAGTAAGTTTCATCAAAACTTAAAAGTTCTACTCTTCAAAAGATACCTTATAAAGAAAGTAAAAAGACACGCCACAGGCTAAGAGAAAGTACTTCTAATCACATATCTAAAAAAGGACTTGTGTCCAGATTAAAGAATTCTTACACATCAATAAGACAACCCAATTAAAAATGGGCAAAAGATTTGAAGAGATATTTAACCAAAGAAAACATATAAATGTG

 

>Penta E (GenBank AC027004-reverse complement; 5 AAAGA repeats)

ACTGGTCTACTTTGGGCTTAAAGTTGACGTCTCATTGCATTGAAAATTATTTGATAAGAGAAAATAAAATACATTTTACCAACATGAAAGGGTACCAATAACAAGAAAATTGTGGACAGGTGCGGTGATTCACGCCTGCAATCCTAGCACTTTGGGAGGCCGATGCAGGTGTATTACCTGAGCTCAGGAGATCAAGACCAGCCTGGGCAACATGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCTGGGTGTGGTGGTAGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAAACAGGAGAATCACTTGAACCCAGGAGGTGGAGATTGAAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCGACTGAGCAAGACTCAGTCTCAAAGAAAAGAAAAGAAAAGAAAAGAAAATTGTAAGGAGTTTTCTCAATTAATAACCCAAATAAGAGAATTCTTTCCATGTATCAATCATGATACT

 

>D2S1338 (GenBank AC010136; 20 repeats)

TAAAGACTTCATGGTCCTGACTACAGTGACAGCAAAACCCTGAAAATGGCAATTCCTACTGGCCCATAATCCAGCTGTGGGAGGGAGCCAGTGGATTTGGAAACAGAAATGGCTTGGCCTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTTCCTTCCCTCCTGCAATCCTTTAACTTACTGAATAACTCATGATTATGGGCCACCTGCAGGTACCATGCTAGGTACTAGGGATGTAGGCATGAACACTGACAAGGGCCTCTGGGACTGGCATTCTGGTAGGAAAAGGGGTGAGACAGGGAAGAAGCCAGCAAATGTATCAACAAGAAACAGTTCTAAGTGCTAGGAAGAAATGAACGTATTGATGTCACATAGATTTGAGGCTCAAAGCAATCGAAGGACTTTAATGGGGTGATCAGAGGAGGCC

 

>D19S433 (GenBank AC0080507-reverse complement; 16 repeats)

GGCTGGGGCAGGAAGATCACTTGAGCCCAGGAGGTTGAGGCTGCAAAAAGCTATAATTGTACCACTGCACTCCAGCCTGGGCAACAGAATAAGATTCTGTTGAAGGAAAGAAGGTAGGAAGGAAGGAAGGAAGTAAGTAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAGGAAGAAAGAGAGAAGATTTTTATTCGGGTAATGGGTGCACCAAAATATCAGAAATCACTGCTAAAGAACTTATTCATGTAACCAACACCACCTGTTCCTTAAAAACCTATTGAAATAAAAACAGAAAGAAAGAGAGAAAGAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGATTGATTCCTAGAACCCC